SRX4666817
GSM3382057: CII input ChIPseq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CLL
Tissue
blood
Lineage
mesoderm
Description
chronic lymphocytic leukemia cell, T-cell lymphocyte

Attributes by original data submitter

Sample

source_name
CII
cell type
CLL cell line
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and samples taken before immunoprecipitation. Immunoprecipitated genomic DNA was prepared for Illumina sequencing using the ThruPLEX DNA-seq kit (Rubicon Genomics).

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43714386
Reads aligned (%)
97.7
Duplicates removed (%)
4.1
Number of peaks
13409 (qval < 1E-05)

hg19

Number of total reads
43714386
Reads aligned (%)
97.0
Duplicates removed (%)
5.3
Number of peaks
13642 (qval < 1E-05)

Base call quality data from DBCLS SRA