Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Neural
Cell type
Dorsal root ganglia
NA
NA

Attributes by original data submitter

Sample

source_name
DRG
tissue
dorsal root ganglia (DRG)
genotype
wildtype
treatment
injured

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq was performed as previously described (Buenrostro et al., 2013) with minor adjustment for application to tissue material. Six fresh L4-L6 DRGs were extracted in 100 µl ice cold cell lysis buffer (10mM Tris-HCl pH 7.4, 10mM NaCl, 3mM MgCl2, 0.5% IGEPAL CA-630) for 5 minutes on ice, then a 21g needle on a 1 mL syringe was used to shear the tissue through the needle 5 times. As in Buenrstro et al. 2013

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
22537152
Reads aligned (%)
45.7
Duplicates removed (%)
11.3
Number of peaks
1435 (qval < 1E-05)

mm9

Number of total reads
22537152
Reads aligned (%)
45.6
Duplicates removed (%)
11.5
Number of peaks
1412 (qval < 1E-05)

Base call quality data from DBCLS SRA