Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ogdh

Cell type

Cell type Class
Unclassified
Cell type
Unclassified
NA
NA

Attributes by original data submitter

Sample

source_name
hear tissue
phenotype
wild type
surgical procedure
Hypertrophied heart / 12wk old mice subjected to Transaortic coarctation (TAC) for 7 days
days post-surgery
7
strain
C57BL/6
antibody
anti-OGDH (Cell Signalling Technologies 26865)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Heart were surgically removed and snap frozen and shipped to Active Motif for ChIP-Seq (a pool of 3 for each condition) Library was constructed by Active Motif (https://www.activemotif.com/) ChIP using anti-ACAA2 and anti-OGDH

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
35171475
Reads aligned (%)
88.9
Duplicates removed (%)
33.3
Number of peaks
5255 (qval < 1E-05)

mm9

Number of total reads
35171475
Reads aligned (%)
88.8
Duplicates removed (%)
33.3
Number of peaks
5233 (qval < 1E-05)

Base call quality data from DBCLS SRA