Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Treg
NA
NA

Attributes by original data submitter

Sample

source_name
Naïve Tregs
subject status/id
Healthy Donor 1
tissue
peripheral blood
cell type
CD4+CD25+ cells
sorted cell type
CD4+CD25hiCD127loCD45RA+ (naïve) Tregs

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cells were captured for each sample and libraries were sequenced on the Illumina Hiseq 2500 instrument. Paired-end libraries (50 cycles) were prepared according to the published ATAC-seq protocol in Shih et al., Cell 2016

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
46482378
Reads aligned (%)
90.0
Duplicates removed (%)
34.7
Number of peaks
24453 (qval < 1E-05)

hg19

Number of total reads
46482378
Reads aligned (%)
89.6
Duplicates removed (%)
34.9
Number of peaks
24386 (qval < 1E-05)

Base call quality data from DBCLS SRA