Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Megakaryocyte-erythroid progenitor
NA
NA

Attributes by original data submitter

Sample

source_name
Ctrl MEP cells
strain
C57BL/6
genotype
wild type
cell type
megakaryocyte-erythroid progenitor (MEP) cells

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
10,000 L-MEPs and normal MEPs were lysed and tagmented using Tn5 according to ATAC-seq protocol. Tagmentated DNA was amplified with NEBNext Q5 Hot Start HiFi PCR Master Mix (New England Biolab, Ipswich, MA) for library preparation. Barcoded libraries were purified and sequenced on a HiSeq2500 platform.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
1470955
Reads aligned (%)
92.1
Duplicates removed (%)
8.6
Number of peaks
1828 (qval < 1E-05)

mm9

Number of total reads
1470955
Reads aligned (%)
91.8
Duplicates removed (%)
8.7
Number of peaks
1833 (qval < 1E-05)

Base call quality data from DBCLS SRA