Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
Megakaryocyte-erythroid progenitor
NA
NA

Attributes by original data submitter

Sample

source_name
Prdm16s Leukemic-MEP cells
strain
C57BL/6
chip antibody
H3K4me3 (#04-745, Millipore, Billerica, MA)
genotype
Prdm16s
cell type
leukemic megakaryocyte-erythroid progenitor (MEP) cells

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
10,000 L-MEP and normal MEP were sorted and treated with Mnase, histone-DNA complexes were isolated with antibody ChIP DNA was purified for end repair, adapter ligation, and amplification using a NEB Ultra II library preparation kit following the manufacturer's protocols (New England BioLabs, Ipswich, MA)

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
7925453
Reads aligned (%)
80.9
Duplicates removed (%)
16.5
Number of peaks
14494 (qval < 1E-05)

mm9

Number of total reads
7925453
Reads aligned (%)
80.7
Duplicates removed (%)
17.5
Number of peaks
14483 (qval < 1E-05)

Base call quality data from DBCLS SRA