Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Gonad
Cell type
Spermatogenic cells
NA
NA

Attributes by original data submitter

Sample

source_name
Spermatogenic cells from P18 Brg1 WT testes
strain
Mixed background
age
P18
tissue
testes
genotype
Brg1WT
cell type
spermatogenic cells

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Spermatogenic cells were isolated from P12 and P18 testes which were digested with collagnease and trypsin followed by filteration through a 40 micron sieve. Cells were prepared for ATAC-seq as described (Buenrostro et al 2013) ATAC-seq libraries were created using protocol from Buenrostro et al 2013, and processed using Nextera adapter sequences for Illumina sequencing

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
16916367
Reads aligned (%)
93.1
Duplicates removed (%)
52.4
Number of peaks
2748 (qval < 1E-05)

mm9

Number of total reads
16916367
Reads aligned (%)
93.0
Duplicates removed (%)
52.5
Number of peaks
2717 (qval < 1E-05)

Base call quality data from DBCLS SRA