SRX4615045
GSM3357728: input DNA; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Cardiovascular
Cell type
Lung endothelial cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse lung endothelial cells
strain background
C57BL/6
cell type
mouse lung endothelial cells
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
extract protocol

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
43100731
Reads aligned (%)
96.7
Duplicates removed (%)
21.0
Number of peaks
397 (qval < 1E-05)

mm9

Number of total reads
43100731
Reads aligned (%)
96.3
Duplicates removed (%)
20.9
Number of peaks
480 (qval < 1E-05)

Base call quality data from DBCLS SRA