Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
MCF7_ER t50
cell line
MCF7
replicate
6
time
t50
control antibody
CTCF Cell signaling D31H2 Lot: 3
target antibody
ER Millipore 06-965 Lot:3008172
factor
ER

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Thruplex

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
29389330
Reads aligned (%)
92.5
Duplicates removed (%)
6.3
Number of peaks
59821 (qval < 1E-05)

hg38

Number of total reads
29389330
Reads aligned (%)
94.0
Duplicates removed (%)
5.3
Number of peaks
59056 (qval < 1E-05)

Base call quality data from DBCLS SRA