Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Cardiovascular
Cell type
Cardiac tissue
NA
NA

Attributes by original data submitter

Sample

source_name
cardiac tissue
tissue
cardiac tissue
antibody
acetylated H3K27
developmental stage
post natal day 21
strain
C57BL/6
genotype
Med1 fl/fl
gender
male

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Hearts from euthanized three-week-old male mice were rapidly harvested, rinsed in cold phosphate buffered saline, and snap frozen in liquid nitrogen. Genomic DNA was extracted from frozen tissue using the Zymo-Spin ChIP Kit according to manufacturer's directions. Chromatin was immunoprecipitated in triplicate using antibodies against RNA Pol-II (Bethyl Laboratories #9201012), H3K27ac (Abcam #ab4729), H3K27me3 (Abcam #ab6002), and normal mouse IgG (Diagenode #C15410206 and Millipore #12-371B). Libraries were prepared from pooled ChIP DNA and constructed by Zymo Research using EpiQuest services and proprietary methods.

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
76503042
Reads aligned (%)
98.1
Duplicates removed (%)
12.7
Number of peaks
43873 (qval < 1E-05)

mm9

Number of total reads
76503042
Reads aligned (%)
98.0
Duplicates removed (%)
12.8
Number of peaks
43963 (qval < 1E-05)

Base call quality data from DBCLS SRA