Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Cardiovascular
Cell type
Cardiac tissue
NA
NA

Attributes by original data submitter

Sample

source_name
cardiac tissue
tissue
cardiac tissue
antibody
RNA Pol-II
developmental stage
post natal day 21
strain
C57BL/6
genotype
Med1 cKO
gender
male

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Hearts from euthanized three-week-old male mice were rapidly harvested, rinsed in cold phosphate buffered saline, and snap frozen in liquid nitrogen. Genomic DNA was extracted from frozen tissue using the Zymo-Spin ChIP Kit according to manufacturer's directions. Chromatin was immunoprecipitated in triplicate using antibodies against RNA Pol-II (Bethyl Laboratories #9201012), H3K27ac (Abcam #ab4729), H3K27me3 (Abcam #ab6002), and normal mouse IgG (Diagenode #C15410206 and Millipore #12-371B). Libraries were prepared from pooled ChIP DNA and constructed by Zymo Research using EpiQuest services and proprietary methods.

Sequencing Platform

instrument_model
Illumina HiSeq 1500

mm10

Number of total reads
38976506
Reads aligned (%)
90.6
Duplicates removed (%)
15.3
Number of peaks
2552 (qval < 1E-05)

mm9

Number of total reads
38976506
Reads aligned (%)
90.4
Duplicates removed (%)
15.4
Number of peaks
2615 (qval < 1E-05)

Base call quality data from DBCLS SRA