Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Adipocyte
Cell type
Adipose progenitor cells
NA
NA

Attributes by original data submitter

Sample

source_name
adipose progenitors
strains
C57BL/6
fat tissue location
visceral
age
16 wks

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Samples were washed in PBS, then lysed in 10 mM Tris-HCL 0.1% IGEPAL buffer, followed by transposition reaction using Nextera DNA Transposase for 30 minutes at 37 degrees. DNA was then isolated using Qiagen MinElute PCR purification. Sequencing libraries were generated as described (Buenrostro Nat Methods 2013) by PCR with Nextera index sequences.

Sequencing Platform

instrument_model
NextSeq 500

mm10

Number of total reads
38269269
Reads aligned (%)
62.9
Duplicates removed (%)
22.7
Number of peaks
18741 (qval < 1E-05)

mm9

Number of total reads
38269269
Reads aligned (%)
62.8
Duplicates removed (%)
22.8
Number of peaks
18720 (qval < 1E-05)

Base call quality data from DBCLS SRA