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For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27ac
wikigenes
PDBj
CellType: MMTV-PyMT
ATCC
MeSH
RIKEN BRC
SRX4580702
GSM3348092: DMSO-rep3-H3K27ac; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27ac
Cell type
Cell type Class
Breast
Cell type
MMTV-PyMT
NA
NA
Attributes by original data submitter
Sample
source_name
Mammary tumor tissue
strain
MMTV-PyVT
tissue
Mammary tumor tissue
treatment
1mg/kg DMSO injection
antibody
H3K27ac
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. ChIP-seq libraries were constructed by VATHS Universal DNA Library Prep Kit for Illumina (Vazyme ND604).
Sequencing Platform
instrument_model
HiSeq X Ten
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
14420927
Reads aligned (%)
64.4
Duplicates removed (%)
4.7
Number of peaks
4275 (qval < 1E-05)
mm9
Number of total reads
14420927
Reads aligned (%)
64.3
Duplicates removed (%)
4.6
Number of peaks
4243 (qval < 1E-05)
Base call quality data from
DBCLS SRA