Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cell
time point
ESC neural differentiation day4
treatment
oct6 overexpressed ESC, input

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Total RNA was extracted from cells using Trizol reagent. For ChIP-Seq, cell lysates were clarified from sonicated nuclei and Oct6-DNA complexes were precipitated with antibody, then genomic DNA was recoveried and purified for subsequent library construction DNA and RNA libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
26742367
Reads aligned (%)
96.6
Duplicates removed (%)
59.5
Number of peaks
659 (qval < 1E-05)

mm9

Number of total reads
26742367
Reads aligned (%)
96.4
Duplicates removed (%)
59.7
Number of peaks
650 (qval < 1E-05)

Base call quality data from DBCLS SRA