Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Bone

Cell type

Osteosarcoma

MeSH Description

A sarcoma originating in bone-forming cells, affecting the ends of long bones. It is the most common and most malignant of sarcomas of the bones, and occurs chiefly among 10- to 25-year-old youths. (From Stedman, 25th ed)

Sample

source_name

Osteosarcoma cell line

cell line

Osteosarcoma cell line

sirna transfection

siSET8

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

Nuclei were prepared and processed with Tn5 transposase cutting as described in Buenrostro J et al; 2015. Illumina Nextera DNA library prep

Sequencing Platform

instrument_model

NextSeq 500

hg38

Number of total reads

42017002

Reads aligned (%)

70.1

Duplicates removed (%)

43.0

Number of peaks

435 (qval < 1E-05)

hg19

Number of total reads

42017002

Reads aligned (%)

69.8

Duplicates removed (%)

43.3

Number of peaks

395 (qval < 1E-05)