SRX4553986
ATAC-Seq of mouse skin T cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Epidermis
Cell type
Skin
NA
NA

Attributes by original data submitter

Sample

strain
Foxp3-gfp
age
8 weeks
sex
female
tissue
skin
code
OH30.ATACTc1

Sequenced DNA Library

library_name
OH30.ATACTc1
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
15093810
Reads aligned (%)
94.3
Duplicates removed (%)
28.9
Number of peaks
25898 (qval < 1E-05)

mm9

Number of total reads
15093810
Reads aligned (%)
94.2
Duplicates removed (%)
29.1
Number of peaks
25965 (qval < 1E-05)

Base call quality data from DBCLS SRA