SRX4553985
ATAC-Seq of mouse skin T cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Epidermis
Cell type
Skin
NA
NA

Attributes by original data submitter

Sample

strain
Foxp3-gfp
age
8 weeks
sex
female
tissue
skin
code
OH27.ATACTc17

Sequenced DNA Library

library_name
OH27.ATACTc17
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
7382990
Reads aligned (%)
95.1
Duplicates removed (%)
37.1
Number of peaks
9728 (qval < 1E-05)

mm9

Number of total reads
7382990
Reads aligned (%)
95.0
Duplicates removed (%)
37.3
Number of peaks
9733 (qval < 1E-05)

Base call quality data from DBCLS SRA