SRX4553984
ATAC-Seq of mouse skin T cells

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Epidermis
Cell type
Skin
NA
NA

Attributes by original data submitter

Sample

strain
Foxp3-gfp
age
8 weeks
sex
female
tissue
skin
code
OH28.ATACTc1

Sequenced DNA Library

library_name
OH28.ATACTc1
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
15701541
Reads aligned (%)
82.4
Duplicates removed (%)
32.1
Number of peaks
22192 (qval < 1E-05)

mm9

Number of total reads
15701541
Reads aligned (%)
82.3
Duplicates removed (%)
32.2
Number of peaks
22150 (qval < 1E-05)

Base call quality data from DBCLS SRA