SRX4552974
ChIP-seq of C4-2B

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Prostate
Cell type
C4-2
Tissue
Prostate
Cell Type
Epithelial
Disease
Prostate Cancer

Attributes by original data submitter

Sample

Treatment
EPZ6438
Replicate
1
assay
ChIP-seq
isolate
C4-2B
age
50
biomaterial_provider
Michigan Center for Translational Pathology
sex
male
tissue
Prostate
cell_line
C4-2B

Sequenced DNA Library

library_name
C4-2B_ChIP-seq_EPZ6438
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
35227025
Reads aligned (%)
98.3
Duplicates removed (%)
8.4
Number of peaks
9266 (qval < 1E-05)

hg19

Number of total reads
35227025
Reads aligned (%)
97.5
Duplicates removed (%)
8.4
Number of peaks
8623 (qval < 1E-05)

Base call quality data from DBCLS SRA