SRX4514437
GSM3320996: lung: NHBE4-PARCB1 ATAC-seq; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Lung
Cell type
Bronchial epithelial cells
NA
NA

Attributes by original data submitter

Sample

source_name
lung
tissue
lung
cell type
transformed bronchial epithelial
transplant
NSG mice

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Nature Methods 10, 1213-1218 (2013)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
26874370
Reads aligned (%)
87.0
Duplicates removed (%)
37.7
Number of peaks
2107 (qval < 1E-05)

hg19

Number of total reads
26874370
Reads aligned (%)
87.0
Duplicates removed (%)
38.0
Number of peaks
2123 (qval < 1E-05)

Base call quality data from DBCLS SRA