SRX4514435
GSM3320994: lung: NHBE1-PARCB1 ATAC-seq; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Lung
Cell type
Bronchial epithelial cells
NA
NA

Attributes by original data submitter

Sample

source_name
lung
tissue
lung
cell type
transformed bronchial epithelial
transplant
NSG mice

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Nature Methods 10, 1213-1218 (2013)

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
38768704
Reads aligned (%)
94.4
Duplicates removed (%)
63.2
Number of peaks
5498 (qval < 1E-05)

hg19

Number of total reads
38768704
Reads aligned (%)
94.2
Duplicates removed (%)
63.2
Number of peaks
5498 (qval < 1E-05)

Base call quality data from DBCLS SRA