Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD8+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
airway resident CD8 memory T cells
tissue
airway resident CD8 memory T cells
strain
C57BL/6J
Sex
female
sorting markers
Live/Dead- CD8+ CD44hi FluNP366-374Db+ CD45.2(IV label)-
organ
Lung Airway
stimulation
35 days post Influenza X31 infection

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Cells were FACS sorted into purified populations. 2000-4000 cells were centrifuged for 10 minutes at 500xg, resuspended in 50 ul of Lysis Buffer (contents), and immediately centrifuged for 30 minutes at 500xg. Tagmentation was performed by resuspending cells in 25 ul of Tagmentation mix (1x TD Buffer, 2.5 ul Tn5 Transpoase) and incubating for 60 minutes at 37°C. DNA was purified and amplified into a sequencing library with KAPA HiFi Polymerase and the Nextera Indexing Kit Primers (Illumina, Inc).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
14336831
Reads aligned (%)
95.2
Duplicates removed (%)
78.2
Number of peaks
13759 (qval < 1E-05)

mm9

Number of total reads
14336831
Reads aligned (%)
95.0
Duplicates removed (%)
78.3
Number of peaks
13757 (qval < 1E-05)

Base call quality data from DBCLS SRA