SRX4496694
GSM3316863: AML P17 Dx H3K27ac; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Blood
Cell type
Acute myeloid leukemia
NA
NA

Attributes by original data submitter

Sample

source_name
Bone marrow
time point
initial diagnosis
antibody
H3K27ac (ab4729)
tissue
Bone marrow
disease
acute myeloid leukemia

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
TruSeq DNA sample preparation kit (Illumina)

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
36275229
Reads aligned (%)
95.1
Duplicates removed (%)
10.8
Number of peaks
28546 (qval < 1E-05)

hg19

Number of total reads
36275229
Reads aligned (%)
94.8
Duplicates removed (%)
11.1
Number of peaks
28572 (qval < 1E-05)

Base call quality data from DBCLS SRA