Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BRD4

Cell type

Cell type Class
Blood
Cell type
DND-41
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
DND-41 persister cells
cell line
DND-41
cell type
T-cell acute lymphoblastic leukemia
treated with
1uM gamma Secretase inhibitor over 7wks
chip antibody
BRD4
chip antibody vendor
Bethyl

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
28787092
Reads aligned (%)
80.1
Duplicates removed (%)
8.1
Number of peaks
11455 (qval < 1E-05)

hg19

Number of total reads
28787092
Reads aligned (%)
79.5
Duplicates removed (%)
9.1
Number of peaks
11461 (qval < 1E-05)

Base call quality data from DBCLS SRA