SRX4485394
ChIP-exo of HCC1806 cells: modification H3K9ac

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Breast
Cell type
HCC1806
Primary Tissue
Breast
Tissue Diagnosis
Carcinoma Squamous Cell

Attributes by original data submitter

Sample

isolate
NA
age
NA
biomaterial_provider
Venters Lab, 746 Robinson Research Building, Nashville, TN 37232
sex
not applicable
tissue
NA
cell_line
HCC1806
cell_type
breast
disease
TNBC

Sequenced DNA Library

library_name
2-ChIP-exo_H3K9ac
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16338702
Reads aligned (%)
92.0
Duplicates removed (%)
65.4
Number of peaks
11090 (qval < 1E-05)

hg19

Number of total reads
16338702
Reads aligned (%)
91.6
Duplicates removed (%)
66.1
Number of peaks
11099 (qval < 1E-05)

Base call quality data from DBCLS SRA