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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: HCC1806
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX4485384
ChIP-exo of HCC1806 cells: RNA polymerase II
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Breast
Cell type
HCC1806
Primary Tissue
Breast
Tissue Diagnosis
Carcinoma Squamous Cell
Attributes by original data submitter
Sample
isolate
NA
age
NA
biomaterial_provider
Venters Lab, 746 Robinson Research Building, Nashville, TN 37232
sex
not applicable
tissue
NA
cell_line
HCC1806
cell_type
breast
disease
TNBC
Sequenced DNA Library
library_name
1-ChIP-exo_Pol2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
82964256
Reads aligned (%)
82.3
Duplicates removed (%)
79.1
Number of peaks
8749 (qval < 1E-05)
hg19
Number of total reads
82964256
Reads aligned (%)
81.8
Duplicates removed (%)
79.8
Number of peaks
8162 (qval < 1E-05)
Base call quality data from
DBCLS SRA