SRX4459395
ChIPseq of HMGN2 in WT iPSC, rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6
age
N/A
sex
N/A
tissue
induced pluripotence stem cell (iPSC)
genetic background
WT
sample_type
ChIP-seq
ChIP target
HMGN2

Sequenced DNA Library

library_name
HMGN2_ChIP_iPSC_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
32012929
Reads aligned (%)
97.9
Duplicates removed (%)
16.7
Number of peaks
34473 (qval < 1E-05)

mm9

Number of total reads
32012929
Reads aligned (%)
97.7
Duplicates removed (%)
16.7
Number of peaks
34437 (qval < 1E-05)

Base call quality data from DBCLS SRA