SRX4459383
ATAC-seq of Hmgn1-/-n2-/- MEF cell, rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

strain
C57BL/6
age
N/A
sex
N/A
tissue
MEF
genetic background
Hmgn1-/-n2-/-
sample_type
ATAC-seq
ChIP target
N/A

Sequenced DNA Library

library_name
ATAC_MEF_DKO_rep1
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
48863014
Reads aligned (%)
98.4
Duplicates removed (%)
30.0
Number of peaks
61959 (qval < 1E-05)

mm9

Number of total reads
48863014
Reads aligned (%)
98.4
Duplicates removed (%)
30.0
Number of peaks
62049 (qval < 1E-05)

Base call quality data from DBCLS SRA