SRX4454484
ChIPseq of H3K27ac in Hmgn1-/-n2-/- MEF induced 4 days, rep1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

strain
C57BL/6
age
N/A
sex
N/A
tissue
MEF induced 4 days
genetic background
Hmgn1-/-n2-/-
sample_type
ChIP-seq
ChIP target
H3K27ac

Sequenced DNA Library

library_name
H3K27ac_day4_DKO_rep1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
83163384
Reads aligned (%)
98.1
Duplicates removed (%)
16.2
Number of peaks
49447 (qval < 1E-05)

mm9

Number of total reads
83163384
Reads aligned (%)
97.9
Duplicates removed (%)
16.1
Number of peaks
49480 (qval < 1E-05)

Base call quality data from DBCLS SRA