SRX4454477
ChIPseq of H3K27ac in WT iPSC, rep2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6
age
N/A
sex
N/A
tissue
induced pluripotence stem cell (iPSC)
genetic background
WT
sample_type
ChIP-seq
ChIP target
H3K27ac

Sequenced DNA Library

library_name
H3K27ac_iPSC_WT_rep2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
40791372
Reads aligned (%)
95.1
Duplicates removed (%)
24.1
Number of peaks
6143 (qval < 1E-05)

mm9

Number of total reads
40791372
Reads aligned (%)
94.8
Duplicates removed (%)
24.1
Number of peaks
6069 (qval < 1E-05)

Base call quality data from DBCLS SRA