SRX4451243
Multi-genomic profiling of EndoC BH1 beta cells and human pancreatic islets

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pancreas
Cell type
EndoC-BH1
NA
NA

Attributes by original data submitter

Sample

isolate
Human fetal pancreatic bud
age
Not applicable
biomaterial_provider
Univercell_Bioslutions
sex
Not applicable
tissue
Pancreas
replicate
EndoC_BH1 ChIP seq H3K4me3 single end biological replicate 1
cell_line
EndoC_BH1
UNOS_ID
Not applicable
cell_type
Pancreatic islet beta cell
ethnicity
Not applicable

Sequenced DNA Library

library_name
EndoC_BH1_ChIP_seq_H3K4me3_SE
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
71999256
Reads aligned (%)
94.5
Duplicates removed (%)
19.3
Number of peaks
59183 (qval < 1E-05)

hg19

Number of total reads
71999256
Reads aligned (%)
91.7
Duplicates removed (%)
25.8
Number of peaks
59106 (qval < 1E-05)

Base call quality data from DBCLS SRA