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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: EndoC-BH1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX4451234
Multi-genomic profiling of EndoC BH1 beta cells and human pancreatic islets
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Pancreas
Cell type
EndoC-BH1
NA
NA
Attributes by original data submitter
Sample
isolate
Human fetal pancreatic bud
age
Not applicable
biomaterial_provider
Univercell_Bioslutions
sex
Not applicable
tissue
Pancreas
replicate
EndoC_BH1 ChIP seq H3K9me3 paired end biological replicate 1
cell_line
EndoC_BH1
UNOS_ID
Not applicable
cell_type
Pancreatic islet beta cell
ethnicity
Not applicable
Sequenced DNA Library
library_name
EndoC_BH1_ChIP_seq_H3K9me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
41598885
Reads aligned (%)
94.8
Duplicates removed (%)
7.0
Number of peaks
4870 (qval < 1E-05)
hg19
Number of total reads
41598885
Reads aligned (%)
91.8
Duplicates removed (%)
9.0
Number of peaks
1052 (qval < 1E-05)
Base call quality data from
DBCLS SRA