Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
MLL-AF9 leukemic cell
NA
NA

Attributes by original data submitter

Sample

source_name
Primary MLL-AF9 AML cells
cell type
Primary MLL-AF9 AML cells
strain
C57BL/6
agent
A51
chip antibody
anti-RNA polymerase II CTD (phospho S2) antibody, Abcam Cat #ab5095

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. Libraries were prepared according to manufacturer's instructions, quantified by Qubit (Invitrogen) and TapeStation (Agilent) and sequenced on an Illumina HiSeq2500 (50 SR lane V4 reagents).

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
40528925
Reads aligned (%)
94.1
Duplicates removed (%)
28.4
Number of peaks
10496 (qval < 1E-05)

mm9

Number of total reads
40528925
Reads aligned (%)
94.0
Duplicates removed (%)
28.4
Number of peaks
10486 (qval < 1E-05)

Base call quality data from DBCLS SRA