SRX4411154
Retina E14.5 ATAC-seq, biological replicate 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
Embryonic retina
NA
NA

Attributes by original data submitter

Sample

strain
not applicable
age
embryo
dev_stage
E14.5
sex
not determined
tissue
retina
replicate
1

Sequenced DNA Library

library_name
L8177_Track-21141
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
42304804
Reads aligned (%)
66.9
Duplicates removed (%)
8.5
Number of peaks
15885 (qval < 1E-05)

mm9

Number of total reads
42304804
Reads aligned (%)
66.8
Duplicates removed (%)
8.5
Number of peaks
15869 (qval < 1E-05)

Base call quality data from DBCLS SRA