SRX4411151
Whole limb E11.5 ATAC-seq, biological replicate 3

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
Embryonic limb
NA
NA

Attributes by original data submitter

Sample

strain
not applicable
age
embryo
dev_stage
E11.5
sex
not determined
tissue
limb
replicate
3

Sequenced DNA Library

library_name
L5147_Track-11223
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
45004495
Reads aligned (%)
74.5
Duplicates removed (%)
5.8
Number of peaks
2965 (qval < 1E-05)

mm9

Number of total reads
45004495
Reads aligned (%)
74.4
Duplicates removed (%)
5.9
Number of peaks
2929 (qval < 1E-05)

Base call quality data from DBCLS SRA