SRX4411146
Lens E14.5 ATAC-seq, biological replicate 1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
Lens
NA
NA

Attributes by original data submitter

Sample

strain
not applicable
age
embryo
dev_stage
E14.5
sex
not determined
tissue
lens
replicate
1

Sequenced DNA Library

library_name
L8179_Track-21143
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
50217096
Reads aligned (%)
65.8
Duplicates removed (%)
9.4
Number of peaks
17633 (qval < 1E-05)

mm9

Number of total reads
50217096
Reads aligned (%)
65.7
Duplicates removed (%)
9.4
Number of peaks
18179 (qval < 1E-05)

Base call quality data from DBCLS SRA