SRX440734
H3K9me2-ChIP-Seq-of-Mutant-ESC-untreated

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

label
Mutant-ESC-untreated
cell_line
Mutant-ESC-untreated
genotype
GLP W877A/W882A/E885A homozygous

Sequenced DNA Library

library_name
H3K9me2-Mutant-ESC
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
125814498
Reads aligned (%)
98.7
Duplicates removed (%)
16.1
Number of peaks
758 (qval < 1E-05)

mm9

Number of total reads
125814498
Reads aligned (%)
98.4
Duplicates removed (%)
15.9
Number of peaks
948 (qval < 1E-05)

Base call quality data from DBCLS SRA