Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Neural
Cell type
Pyramidal Cells
MeSH Description
Projection neurons in the CEREBRAL CORTEX and the HIPPOCAMPUS. Pyramidal cells have a pyramid-shaped soma with the apex and an apical dendrite pointed toward the pial surface and other dendrites and an axon emerging from the base. The axons may have local collaterals but also project outside their cortical region.

Attributes by original data submitter

Sample

strain
B6.Cg-Tg(Thy1-YFPH)2Jrs/J
isolate
single individual
age
P51
sex
female
tissue
Brain cortex
birth_date
2016
birth_location
PRBB - Barcelona
cell_subtype
Thy1pos pyramidal neurons replicate 2
cell_type
Thy1pos pyramidal neurons
treatment
CTL

Sequenced DNA Library

library_name
ATACseq_FACS_Thy_CTL_rep2_14124_13988
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
67330824
Reads aligned (%)
89.9
Duplicates removed (%)
74.1
Number of peaks
1359 (qval < 1E-05)

mm9

Number of total reads
67330824
Reads aligned (%)
89.8
Duplicates removed (%)
74.1
Number of peaks
1333 (qval < 1E-05)

Base call quality data from DBCLS SRA