ChIP-Atlas: SRX4403328

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Pluripotent stem cell
Cell type: ES cells
NA: NA

Attributes by original data submitter

Sample

source_name: Embryonic stem cells
tissue: Embryonic stem cells
chip antibody: None
cell type: ZFP296 CRISPR KO clone 27 R1 ESCs
culture conditions: Serum/LIF +2i

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: Libraries were prepared for Illumina sequencing using 5 ng of ChIP material with a Kapa Hyper Prep Kit (Kapa Biosystems), according to the manufacturer's instructions

Sequencing Platform

instrument_model: NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads: 22559319
Reads aligned (%): 97.8
Duplicates removed (%): 7.2
Number of peaks: 159 (qval < 1E-05)

mm9

Number of total reads: 22559319
Reads aligned (%): 97.6
Duplicates removed (%): 8.0
Number of peaks: 160 (qval < 1E-05)

Base call quality data from DBCLS SRA