Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Epidermis
Cell type
Skin
MeSH Description
The outer covering of the body that protects it from the environment. It is composed of the DERMIS and the EPIDERMIS.

Attributes by original data submitter

Sample

isolate
SSc 112
age
N/A
biomaterial_provider
Friedrich-Alexander-University (FAU) Erlangen-Nuremberg and University Hospital Erlangen, Department of Internal Medicine 3, Rheumatology and Immunology
sex
not applicable
tissue
Skin

Sequenced DNA Library

library_name
SSc112_IgG
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
15765686
Reads aligned (%)
16.2
Duplicates removed (%)
82.7
Number of peaks
62 (qval < 1E-05)

hg19

Number of total reads
15765686
Reads aligned (%)
16.0
Duplicates removed (%)
84.2
Number of peaks
59 (qval < 1E-05)

Base call quality data from DBCLS SRA