SRX4395300
GSM3273045: RWPE1-BAC-RARG-EGFP DMSO IgG R3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Prostate
Cell type
RWPE-1
Primary Tissue
Prostate
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
non-malignant prostate cell line infected with BAC-RARG-EGFP
gender
male
cell line
RWPE-1
cell type
non-malignant prostate epithelial cell
ip
IgG
treatment
DMSO
treatment time
2hr

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted after IP using Omega Cycle Pure Kit Libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
29929974
Reads aligned (%)
97.7
Duplicates removed (%)
13.6
Number of peaks
1048 (qval < 1E-05)

hg19

Number of total reads
29929974
Reads aligned (%)
96.9
Duplicates removed (%)
14.9
Number of peaks
729 (qval < 1E-05)

Base call quality data from DBCLS SRA