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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Unclassified
wikigenes
PDBj
CellType: RWPE-1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX4395287
GSM3273032: RWPE1-BAC-RARG-EGFP CD437 input R1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Unclassified
Antigen
Unclassified
Cell type
Cell type Class
Prostate
Cell type
RWPE-1
Primary Tissue
Prostate
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
non-malignant prostate cell line infected with BAC-RARG-EGFP
gender
male
cell line
RWPE-1
cell type
non-malignant prostate epithelial cell
ip
input
treatment
CD437
treatment time
2hr
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted after IP using Omega Cycle Pure Kit Libraries were prepared for sequencing using standard Illumina protocols
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
31128384
Reads aligned (%)
98.5
Duplicates removed (%)
4.5
Number of peaks
1042 (qval < 1E-05)
hg19
Number of total reads
31128384
Reads aligned (%)
97.6
Duplicates removed (%)
5.5
Number of peaks
732 (qval < 1E-05)
Base call quality data from
DBCLS SRA