SRX4389713
GSM3271046: H3K27ac ChIPSeq Proliferation; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Neural
Cell type
Oligodendrocyte progenitor cells
NA
NA

Attributes by original data submitter

Sample

source_name
oli-neu
tissue
oli-neu cells
cell type
embryonic derived oligodendrocyte progenitor cells
strain
C57BL/6
chip antibody
H3K27ac (Millipore, 17-683)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21402282
Reads aligned (%)
79.5
Duplicates removed (%)
54.8
Number of peaks
249 (qval < 1E-05)

mm9

Number of total reads
21402282
Reads aligned (%)
79.4
Duplicates removed (%)
55.0
Number of peaks
269 (qval < 1E-05)

Base call quality data from DBCLS SRA