Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ahcy

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ChIPseq_Ahcy
cell line
E14
cell type
mouse Embryonic Stem Cells (mESCs)
chip antibody
AHCY (MBL RN126PW (rabbit))
genotype
WT

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA extraction was performed using the RNeasy mini kit (Qiagen) following manufacturer's instruction. RNA samples were quantified and quality was evaluated using Bioanalyzer (RIN > 9.9). A total of 0.5 ug of RNA was used as starting material for library preparation with rRNA depletion using TruSeq Stranded Total RNA Library Prep kit (Ilumina) following the manufacturer´s instruction. Libraries were prepared according to Illumina instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

mm10

Number of total reads
117373523
Reads aligned (%)
90.0
Duplicates removed (%)
24.9
Number of peaks
1465 (qval < 1E-05)

mm9

Number of total reads
117373523
Reads aligned (%)
89.8
Duplicates removed (%)
24.9
Number of peaks
1618 (qval < 1E-05)

Base call quality data from DBCLS SRA