Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Suz12

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cell
tissue
mouse embryonic stem cell
chip antibody
SUZ12 (D39F6, Cell Signaling #3737)
genotype/variation
Ezh1KO_Ezh2KO-resEZH2Y731D

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
1% formaldehyde cross-linked chromatin was sheared by sonication and the DNA fragments associated with the proteins of interest were selectively immunoprecipitated using specific antibodies Libraries were prepared according to Blecher-Gonen R., et al. 2013 and sequenced on Illumina HiSeq 2000

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
24449181
Reads aligned (%)
79.1
Duplicates removed (%)
20.4
Number of peaks
15280 (qval < 1E-05)

mm9

Number of total reads
24449181
Reads aligned (%)
79.0
Duplicates removed (%)
20.6
Number of peaks
15296 (qval < 1E-05)

Base call quality data from DBCLS SRA