Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cell
tissue
mouse embryonic stem cell
chip antibody
H3K27me3 (C36B11, Cell Signaling #9733)
genotype/variation
Ezh2KO

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
1% formaldehyde cross-linked chromatin was sheared by sonication and the DNA fragments associated with the proteins of interest were selectively immunoprecipitated using specific antibodies Libraries were prepared according to Blecher-Gonen R., et al. 2013 and sequenced on Illumina HiSeq 2000

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
46117407
Reads aligned (%)
51.5
Duplicates removed (%)
26.1
Number of peaks
9595 (qval < 1E-05)

mm9

Number of total reads
46117407
Reads aligned (%)
51.2
Duplicates removed (%)
26.2
Number of peaks
9480 (qval < 1E-05)

Base call quality data from DBCLS SRA