Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse embryonic stem cell
tissue
mouse embryonic stem cell
chip antibody
home made
genotype/variation
EZh2Y726D

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
1% formaldehyde cross-linked chromatin was sheared by sonication and the DNA fragments associated with the proteins of interest were selectively immunoprecipitated using specific antibodies Libraries were prepared according to Blecher-Gonen R., et al. 2013 and sequenced on Illumina HiSeq 2000

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
29254374
Reads aligned (%)
95.0
Duplicates removed (%)
10.1
Number of peaks
734 (qval < 1E-05)

mm9

Number of total reads
29254374
Reads aligned (%)
94.9
Duplicates removed (%)
10.2
Number of peaks
749 (qval < 1E-05)

Base call quality data from DBCLS SRA