Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Yeast strain
Cell type
EKY28
NA
NA

Attributes by original data submitter

Sample

strain
EKY8
host
not applicable
isolation_source
not applicable
collection_date
2016-06
geo_loc_name
USA: New York
sample_type
cultured yeast
data type
ChIP-seq
paired end
No
ChIP-target
TBP
Rapamycin_info
TBP-AA plus rapamycin

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

sacCer3

Number of total reads
13237212
Reads aligned (%)
20.6
Duplicates removed (%)
22.3
Number of peaks
343 (qval < 1E-05)

Base call quality data from DBCLS SRA