Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
Leukocytes
subject status
healthy anonymous donor
tissue
whole blood
cell type
CD4+ Tmem cells
stimulated with
anti-CD3/CD28 beads for 1hr

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Nucleosome isolation was performed as described earlier (Buenrostro et al, Nature Methods 2013). ATAC-seq open chromatin sequencing was performed as described earlier (Buenrostro et al, Nature Methods 2013).

Sequencing Platform

instrument_model
Illumina MiSeq

hg38

Number of total reads
52241220
Reads aligned (%)
0.0
Duplicates removed (%)
59.4
Number of peaks
9454 (qval < 1E-05)

hg19

Number of total reads
52241220
Reads aligned (%)
0.0
Duplicates removed (%)
59.5
Number of peaks
9301 (qval < 1E-05)

Base call quality data from DBCLS SRA