Antigen

Antigen Class

TFs and others

Antigen

Foxa1

Cell type

Cell type Class

Liver

Cell type

Liver

MeSH Description

A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Sample

source_name

liver

strain

C3H/HeN

Sex

male

replicate animal

1

chip antibody

FOXA1 (abcam, ab5089)

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Chromatin was fragmented by sonication with Covaris S220. Immunoprecipitation was performed with FOXA1 antibody (abcam, ab5089) NEXTflex Rapid DNA-Seq Library Prep Kit

Sequencing Platform

instrument_model

Illumina NovaSeq 6000

mm10

Number of total reads

28121182

Reads aligned (%)

78.8

Duplicates removed (%)

17.9

Number of peaks

14311 (qval < 1E-05)

mm9

Number of total reads

28121182

Reads aligned (%)

78.7

Duplicates removed (%)

18.2

Number of peaks

14282 (qval < 1E-05)